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contig assembly phrap  (PrimerDesign Inc)

 
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    PrimerDesign Inc contig assembly phrap
    Illustration of Gap Mapper algorithm for <t>contig</t> calculation . Clone reads deemed to be of sufficient quality are supplemented by a pseudo read generated from the reference sequence with all bases set to a confidence score of 19 and submitted to the <t>Phrap</t> <t>assembly</t> process. The alignment matrix of clone reads is retrieved from Phrap output in order to determine the positions of each read relative to the reference sequence. Consensus sequences and confidence scores are computed for the various contigs using a naïve Bayes classifier, and the results are reported. The calculated contigs are trimmed to drop low confidence tails.
    Contig Assembly Phrap, supplied by PrimerDesign Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/contig+assembly+phrap/pmc01914086-80-22-33?v=PrimerDesign+Inc
    Average 90 stars, based on 1 article reviews
    contig assembly phrap - by Bioz Stars, 2026-06
    90/100 stars

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    1) Product Images from "A novel approach to sequence validating protein expression clones with automated decision making"

    Article Title: A novel approach to sequence validating protein expression clones with automated decision making

    Journal: BMC Bioinformatics

    doi: 10.1186/1471-2105-8-198

    Illustration of Gap Mapper algorithm for contig calculation . Clone reads deemed to be of sufficient quality are supplemented by a pseudo read generated from the reference sequence with all bases set to a confidence score of 19 and submitted to the Phrap assembly process. The alignment matrix of clone reads is retrieved from Phrap output in order to determine the positions of each read relative to the reference sequence. Consensus sequences and confidence scores are computed for the various contigs using a naïve Bayes classifier, and the results are reported. The calculated contigs are trimmed to drop low confidence tails.
    Figure Legend Snippet: Illustration of Gap Mapper algorithm for contig calculation . Clone reads deemed to be of sufficient quality are supplemented by a pseudo read generated from the reference sequence with all bases set to a confidence score of 19 and submitted to the Phrap assembly process. The alignment matrix of clone reads is retrieved from Phrap output in order to determine the positions of each read relative to the reference sequence. Consensus sequences and confidence scores are computed for the various contigs using a naïve Bayes classifier, and the results are reported. The calculated contigs are trimmed to drop low confidence tails.

    Techniques Used: Generated, Sequencing



    Similar Products

    contig assembly phrap  (PrimerDesign Inc)
    90
    PrimerDesign Inc contig assembly phrap
    Illustration of Gap Mapper algorithm for <t>contig</t> calculation . Clone reads deemed to be of sufficient quality are supplemented by a pseudo read generated from the reference sequence with all bases set to a confidence score of 19 and submitted to the <t>Phrap</t> <t>assembly</t> process. The alignment matrix of clone reads is retrieved from Phrap output in order to determine the positions of each read relative to the reference sequence. Consensus sequences and confidence scores are computed for the various contigs using a naïve Bayes classifier, and the results are reported. The calculated contigs are trimmed to drop low confidence tails.
    Contig Assembly Phrap, supplied by PrimerDesign Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/contig+assembly+phrap/pmc01914086-80-22-33?v=PrimerDesign+Inc
    Average 90 stars, based on 1 article reviews
    contig assembly phrap - by Bioz Stars, 2026-06
    90/100 stars
    		  Buy from Supplier

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    Illustration of Gap Mapper algorithm for contig calculation . Clone reads deemed to be of sufficient quality are supplemented by a pseudo read generated from the reference sequence with all bases set to a confidence score of 19 and submitted to the Phrap assembly process. The alignment matrix of clone reads is retrieved from Phrap output in order to determine the positions of each read relative to the reference sequence. Consensus sequences and confidence scores are computed for the various contigs using a naïve Bayes classifier, and the results are reported. The calculated contigs are trimmed to drop low confidence tails.

    Journal: BMC Bioinformatics

    Article Title: A novel approach to sequence validating protein expression clones with automated decision making

    doi: 10.1186/1471-2105-8-198

    Figure Lengend Snippet: Illustration of Gap Mapper algorithm for contig calculation . Clone reads deemed to be of sufficient quality are supplemented by a pseudo read generated from the reference sequence with all bases set to a confidence score of 19 and submitted to the Phrap assembly process. The alignment matrix of clone reads is retrieved from Phrap output in order to determine the positions of each read relative to the reference sequence. Consensus sequences and confidence scores are computed for the various contigs using a naïve Bayes classifier, and the results are reported. The calculated contigs are trimmed to drop low confidence tails.

    Article Snippet: Some basic sequencing programs handle pre-processing of sequence trace files, base calling [ ], quality clipping, vector trimming and removal [ ], contig assembly (phrap [ ] or TIGR assembler [ ]) and primer design [ ].

    Techniques: Generated, Sequencing